lisbet.cli.commands#

LISBET CLI Command Configuration#

This module provides configuration functions for various LISBET CLI commands. Each function configures an argparse.ArgumentParser for a specific command, allowing users to specify command-line arguments and options. The commands include: - evaluate_model: Evaluate a trained model on a dataset. - fetch_dataset: Download public datasets from the LISBET repository. - fetch_model: Download public models from the LISBET repository. - model_info: Display information about a LISBET model configuration. - reduce_dimensions: Perform dimensionality reduction using UMAP. - segment_motifs: Segment behavioral motifs using HMM. - select_prototypes: Select prototype behaviors from multiple annotations. - annotate_behavior: Annotate behaviors using a trained model. - compute_embeddings: Compute behavioral embeddings using a trained model. - export_embedder: Export an embedding model. - train_model: Train a model on a dataset. Each configuration function adds relevant arguments to the parser, allowing users to customize the command’s behavior.

lisbet.cli.commands.configure_evaluate_model_parser(parser)[source]#

Configure evaluate_model command parser.

Return type:: None

lisbet.cli.commands.configure_fetch_dataset_parser(parser)[source]#

Configure fetch_dataset command parser.

Return type:: None

lisbet.cli.commands.configure_fetch_model_parser(parser)[source]#

Configure fetch_dataset command parser.

Return type:: None

lisbet.cli.commands.configure_model_info_parser(parser)[source]#

Configure model_info command parser.

Return type:: None

lisbet.cli.commands.configure_reduce_dimensions_parser(parser)[source]#

Configure reduce_dimensions command parser.

Return type:: None

lisbet.cli.commands.configure_segment_motifs_parser(parser)[source]#

Configure segment_motifs command parser.

Return type:: None

lisbet.cli.commands.configure_select_prototypes_parser(parser)[source]#

Configure select_prototypes command parser.

Return type:: None

lisbet.cli.commands.configure_annotate_behavior_parser(parser)[source]#

Configure annotate_behavior command parser.

Return type:: None

lisbet.cli.commands.configure_compute_embeddings_parser(parser)[source]#

Configure compute_embeddings command parser.

Return type:: None

lisbet.cli.commands.configure_export_embedder_parser(parser)[source]#

Configure export_embedder command parser.

Return type:: None

lisbet.cli.commands.configure_train_model_parser(parser)[source]#

Configure train_model command parser.

Return type:: None

Modules

`eval`	Evaluate a model on keypoint data.
`fetch`	Fetch datasets and models from the lisbet repository.
`info`	Module for handling model information retrieval.
`postproc`	Post-processing command line argument parsers.
`predict`	Configure predict command parsers for LISBET CLI.
`train`	Train a model for keypoint classification and export the embedder.